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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43209865_43210535_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43209865 - 43210535
Intron Length:
671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTACA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTAATAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
CAATTCTTAATA
Flanking Amino Acid:
LEVGDAGKFERMNKLPSRRV
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
76.7
33.9
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
64.8
0.33
1.1
65.2
38.9
Minor 5ss
29.2
-2.4
2.8
33.9
41.6
Minor BPS
69.7
0.61
1.2
68.8
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015983
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016674
43206276 - 43212276
6001