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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43210673_43212074_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43210673 - 43212074
Intron Length:
1402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAATATA
5'SS Class:
major
3'SS Sequence:
TTTCCCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
AATTCTGTATTT
Flanking Amino Acid:
DVILAGYPKSGTNWVGQILS
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
0.9
78.2
30.5
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
86
0.81
0.7
77.5
31.2
Minor 5ss
33.4
-1.9
2.9
38.6
41.7
Minor BPS
48.7
-0
2.2
71.01
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015983
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016674
43206276 - 43212276
6001