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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4322493_4323928_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4322493 - 4323928
Intron Length:
1436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTGCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
TGTCTCGTTACT
Flanking Amino Acid:
YYTFFDLNPKYDAVRINQIY
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
0.9
75.3
32.6
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
89
0.88
0.8
84.3
30.8
Minor 5ss
34.8
-1.7
3.5
49.1
41
Minor BPS
48.4
-0
2.3
74
42.5

Associated Gene:

Gene:
FERMT1
Ensembl Gene ID:
ENSAPLG00000001367
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001656
4316204 - 4334303
18100