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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4324037_4324975_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4324037 - 4324975
Intron Length:
939

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCATGTACT
5'SS Class:
strong_major
3'SS Sequence:
TGATTTATTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TGATTCTTGATT
Flanking Amino Acid:
EEMLIFAALQYHISKLSSSS
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.97
0.9
86.9
30.2
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
76.7
0.6
0.9
74.9
39.6
Minor 5ss
34.1
-1.8
3.8
51.8
44.8
Minor BPS
71.2
0.75
1.1
79.97
35.9

Associated Gene:

Gene:
FERMT1
Ensembl Gene ID:
ENSAPLG00000001367
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001656
4316204 - 4334303
18100