About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43240486_43241930_R

Intron Information:

Intron Rank:
149269
Intron Class:
major
Intron Phase:
Intron Coordinates:
43240486 - 43241930
Intron Length:
1445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
GCAAAATGATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.8
82.4
29.8
Major BPS
68
0.45
1
57.8
39
Major PPT
100
1.12
0.4
100
0
Minor 5ss
36.2
-1.6
2.6
40.7
39.2
Minor BPS
38.4
-0.8
1.9
50.13
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027807
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031124
43239849 - 43247618
7770