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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43252849_43254464_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43252849 - 43254464
Intron Length:
1616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGTGC
5'SS Class:
major
3'SS Sequence:
TTCACCTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATTTCACCT
Flanking Amino Acid:
YLDSDSRPSSGFYDLSDGGS
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.2
64.8
42.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.5
0.66
0.8
73.4
31.4
Minor 5ss
42.6
-0.8
3.2
59.3
45.5
Minor BPS
52
0.14
1.8
76.2
40.8

Associated Gene:

Gene:
DACT2
Ensembl Gene ID:
ENSAPLG00000016135
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016828
43247639 - 43260012
12374