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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4325297_4327051_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4325297 - 4327051
Intron Length:
1755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAG
U12 Branch Point Sequence:
ATTTCAGTGACA
Flanking Amino Acid:
PKLADYLRLVRPRKLSIKSI
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
83.6
22.5
Major BPS
67.2
0.43
1.5
77.4
37.3
Major PPT
97.3
1.06
0.5
96.6
11.5
Minor 5ss
35
-1.7
2.8
42.9
44.7
Minor BPS
52.7
0.08
2.3
74.04
37.3

Associated Gene:

Gene:
FERMT1
Ensembl Gene ID:
ENSAPLG00000001367
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001656
4316204 - 4334303
18100