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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43254753_43258222_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43254753 - 43258222
Intron Length:
3470

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTGAT
5'SS Class:
strong_major
3'SS Sequence:
ATCCACTGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTGATTTAATT
Flanking Amino Acid:
ARSRPRPVSTGDLERLIPAD
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
83.3
28.2
Major BPS
100
1.24
0.5
100
0
Major PPT
64.1
0.32
1
58.3
37.4
Minor 5ss
34.4
-1.8
3.3
49.3
46.9
Minor BPS
62.3
0.46
1.6
77.31
39.6

Associated Gene:

Gene:
DACT2
Ensembl Gene ID:
ENSAPLG00000016135
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016828
43247639 - 43260012
12374