About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43283811_43285372_R

Intron Information:

Intron Rank:
153695
Intron Class:
major
Intron Phase:
Intron Coordinates:
43283811 - 43285372
Intron Length:
1562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGCTTG
5'SS Class:
major
3'SS Sequence:
TTCCTCCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
TGATAACAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
72.5
39.9
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
78.3
0.64
0.7
72.6
25.8
Minor 5ss
49.2
-0
2.8
64.9
40.8
Minor BPS
40.9
-0.6
2.2
60.93
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030177
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019873
43281864 - 43285519
3656