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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4329788_4331293_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
4329788 - 4331293
Intron Length:
1506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCCTGA
5'SS Class:
weak_major
3'SS Sequence:
CTGTGTTTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTCAA
U12 Branch Point Sequence:
TCAACTGCAATC
Flanking Amino Acid:
RYTKKYKSKQLAARILEAHQ
Intron Amino Acid Position:
532

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.1
0.4
1.2
58.5
43.1
Major BPS
55.5
0.14
1.2
59
37.9
Major PPT
76.6
0.6
0.9
68.5
42.1
Minor 5ss
67
0.57
1.9
73.9
42.5
Minor BPS
43.1
-0.5
2.1
51.66
40

Associated Gene:

Gene:
FERMT1
Ensembl Gene ID:
ENSAPLG00000001367
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001656
4316204 - 4334303
18100