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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43329774_43400808_R

Intron Information:

Intron Rank:
151848
Intron Class:
major
Intron Phase:
Intron Coordinates:
43329774 - 43400808
Intron Length:
71035

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GTGTTTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAG
U12 Branch Point Sequence:
TAAGTAGTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
79.3
31.1
Major BPS
61.8
0.29
1.5
69.7
35.5
Major PPT
79.6
0.67
1
76.9
42.1
Minor 5ss
28.2
-2.5
2.8
32.2
42.5
Minor BPS
42.5
-0.5
2.2
61.1
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029244
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045020
43329684 - 43401653
71970