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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43373861_43402097_R

Intron Information:

Intron Rank:
151847
Intron Class:
major
Intron Phase:
Intron Coordinates:
43373861 - 43402097
Intron Length:
28237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTGCC
5'SS Class:
strong_major
3'SS Sequence:
ATGTGTGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
GCTTTTTCAGCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
75.1
33.1
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
72.7
0.51
1
65.7
44.8
Minor 5ss
34
-1.8
3.1
45.2
42.8
Minor BPS
49.7
0.06
1.8
68.21
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029244
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044771
43373583 - 43402383
28801