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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4342289_4343195_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4342289 - 4343195
Intron Length:
907

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TGTCATCTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TGTTTGTCATCT
Flanking Amino Acid:
TPRLSHLSFQNCNLSSFNPW
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
79
35.3
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
75.9
0.58
0.9
70
36.1
Minor 5ss
36.1
-1.6
3.3
49.5
41.2
Minor BPS
46.4
-0.1
2.4
72.47
44.4

Associated Gene:

Gene:
LRRN4
Ensembl Gene ID:
ENSAPLG00000003229
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003285
4340211 - 4353513
13303