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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43430848_43432895_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43430848 - 43432895
Intron Length:
2048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAGAG
5'SS Class:
major
3'SS Sequence:
GTCTCTGCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TGTTATTTAACA
Flanking Amino Acid:
SKEWKKETNKGTEKFSPPFV
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
68.8
36.3
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
70.5
0.46
0.9
62
39.9
Minor 5ss
31.5
-2.1
3.4
38.6
40.8
Minor BPS
74.3
0.76
1.4
81.26
33.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016171
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016877
43415244 - 43446174
30931