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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43434766_43437007_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43434766 - 43437007
Intron Length:
2242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTGGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAA
U12 Branch Point Sequence:
AGTTGCTGACTT
Flanking Amino Acid:
FEPQAYFPQWIIAKRGSDYI
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
78.8
38.3
Major BPS
62
0.3
1
53
34.1
Major PPT
67
0.38
1
64.9
41.3
Minor 5ss
43.4
-0.7
2.8
50
46.2
Minor BPS
47.2
-0.1
2.1
67.9
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016171
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016877
43415244 - 43446174
30931