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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43440223_43441732_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43440223 - 43441732
Intron Length:
1510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CATTCTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
CTCTCCTCATTC
Flanking Amino Acid:
KQIQKLEEAEEKKRYRESYI
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
72.3
37.8
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
82.2
0.73
0.8
80.3
31.2
Minor 5ss
39.1
-1.2
3.1
52.5
44.7
Minor BPS
51.1
0.01
1.9
62.01
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016171
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016877
43415244 - 43446174
30931