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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43442335_43443068_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43442335 - 43443068
Intron Length:
734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATGT
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CGCTTCTTATTT
Flanking Amino Acid:
SLPLDAASCQAVNQESLSVV
Intron Amino Acid Position:
488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
77.6
33.4
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
85.1
0.79
0.7
79.9
25.4
Minor 5ss
34.2
-1.8
3.2
47.6
47.9
Minor BPS
56.1
0.27
1.6
67.46
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016171
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016877
43415244 - 43446174
30931