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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43443149_43445167_F

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
43443149 - 43445167
Intron Length:
2019

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
ACTGAACTGGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TTTCACTGAACT
Flanking Amino Acid:
RGQSVESLHQVKSPRGRSCT
Intron Amino Acid Position:
515

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
58.4
0.19
1.1
51.5
42.1
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
68.7
0.67
1.6
88.18
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016171
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016877
43415244 - 43446174
30931