About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43458528_43459773_R


Intron Information:

Intron Rank:
14

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
43458528 - 43459773

Intron Length:
1246

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TAG|GTAAGGAAG

5'SS Class:
strong_major

3'SS Sequence:
TTCCTGCTTCCAG|G

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
ATAACAA

U12 Branch Point Sequence:
GATAAATGAGCA

Flanking Amino Acid:
KLTHLLQDSVGGDAKLLVML

Intron Amino Acid Position:
537

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
90.1
0.94
0.8
78.6
37.2

Major BPS
53
0.08
1
61.4
34.3

Major PPT
81.5
0.71
0.8
72.8
37.5

Minor 5ss
31.6
-2.1
3.1
38.7
46.6

Minor BPS
40.4
-0.7
1.9
50.36
39.3

Associated Gene:

Gene:
KIF25

Ensembl Gene ID:

Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

43458119 - 43498876
40758