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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43469527_43470621_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43469527 - 43470621
Intron Length:
1095

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACACTA
5'SS Class:
major
3'SS Sequence:
TTTTATTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTCTATTT
Flanking Amino Acid:
IIPRATQEVFRLISEKPPGS
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
71.7
40.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89
0.88
0.7
81.5
35.9
Minor 5ss
41.1
-1
3.2
56.8
47.3
Minor BPS
54.8
0.23
1.9
79.65
37.1

Associated Gene:

Gene:
KIF25
Ensembl Gene ID:
ENSAPLG00000016274
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016980
43458119 - 43498876
40758