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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43475274_43480010_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43475274 - 43480010
Intron Length:
4737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTCAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCTCCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TTTTTCTTCAGT
Flanking Amino Acid:
TSVNKTFQFERVYSAFESQD
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
74
38.4
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
79.7
0.67
0.8
77.1
31.6
Minor 5ss
29
-2.4
3.2
40
46.1
Minor BPS
64.3
0.53
2
86.99
39.2

Associated Gene:

Gene:
KIF25
Ensembl Gene ID:
ENSAPLG00000016274
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016980
43458119 - 43498876
40758