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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43480079_43483804_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43480079 - 43483804
Intron Length:
3726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTCTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
ATGATATTAACT
Flanking Amino Acid:
SEKVAYALDDETVLVKCSRP
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
85.2
25.5
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
80.5
0.69
0.8
73.8
36.9
Minor 5ss
36.3
-1.6
2.9
46.9
41.8
Minor BPS
61
0.42
1.6
76.16
40.1

Associated Gene:

Gene:
KIF25
Ensembl Gene ID:
ENSAPLG00000016274
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016980
43458119 - 43498876
40758