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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43485731_43487043_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43485731 - 43487043
Intron Length:
1313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
AATCTAATCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTTGTGTTAAAT
Flanking Amino Acid:
KRRVLHNSLVELRGNIRVHC
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
80
32.8
Major BPS
80
0.75
1
78.6
31
Major PPT
62.3
0.28
0.9
52.8
40.8
Minor 5ss
42.9
-0.8
2.8
60.8
37.7
Minor BPS
55.1
0.24
2.2
80.39
41.7

Associated Gene:

Gene:
KIF25
Ensembl Gene ID:
ENSAPLG00000016274
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016980
43458119 - 43498876
40758