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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43487148_43490328_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43487148 - 43490328
Intron Length:
3181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGCTC
5'SS Class:
major
3'SS Sequence:
TTTCTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
AGTTCTTTGAAA
Flanking Amino Acid:
EIQLQNEAMQMFQIKAFDLE
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
70.6
39.9
Major BPS
74.8
0.62
1
67
39.8
Major PPT
92.8
0.96
0.6
88.6
20.9
Minor 5ss
37
-1.5
3.5
51.2
39.7
Minor BPS
64.6
0.45
1.4
70.49
34.9

Associated Gene:

Gene:
KIF25
Ensembl Gene ID:
ENSAPLG00000016274
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016980
43458119 - 43498876
40758