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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43496533_43498123_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43496533 - 43498123
Intron Length:
1591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGGGGC
5'SS Class:
major
3'SS Sequence:
TTTGTTTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TTGTTTTTGTTT
Flanking Amino Acid:
RVRQLQRGLRTKEERIVVLE
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
59.3
39.8
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
84.8
0.78
0.7
84.8
30
Minor 5ss
23.7
-3
3.3
23.4
37.6
Minor BPS
44
-0.3
3.4
73.17
39

Associated Gene:

Gene:
KIF25
Ensembl Gene ID:
ENSAPLG00000016274
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016980
43458119 - 43498876
40758