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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43504319_43504936_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43504319 - 43504936
Intron Length:
618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATATGC
5'SS Class:
major
3'SS Sequence:
TTCCCCTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
AGAATTATAACA
Flanking Amino Acid:
YRDPRDKRSKSQDTDLPGAP
Intron Amino Acid Position:
1718

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
64.8
35.9
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
80.4
0.68
0.7
73.1
31.8
Minor 5ss
32.9
-1.9
3
42.3
44.5
Minor BPS
48.6
-0.1
1.6
56.99
35.4

Associated Gene:

Gene:
AFDN
Ensembl Gene ID:
ENSAPLG00000002298
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017037
43504174 - 43595836
91663
ENSAPLT00000017035
43504174 - 43595836
91663
ENSAPLT00000017034
43504174 - 43595836
91663
ENSAPLT00000022178
43504174 - 43595836
91663