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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43509456_43509565_R

Intron Information:

Intron Rank:
30
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
43509456 - 43509565
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTCTGTACA
5'SS Class:
major
3'SS Sequence:
CCTCAAAACACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACCTCAA
U12 Branch Point Sequence:
CTTACCTCAAAA
Flanking Amino Acid:
ERRLLEPDEPGPLP*
Intron Amino Acid Position:
1633

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.2
0.38
1.3
66
39.3
Major BPS
64.3
0.36
1
65.6
31.9
Major PPT
58.7
0.2
1
50.8
35.8
Minor 5ss
37.7
-1.4
2.4
40.7
40.1
Minor BPS
58.8
0.27
1.7
70.07
41.7

Associated Gene:

Gene:
AFDN
Ensembl Gene ID:
ENSAPLG00000002298
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002401
43509374 - 43595857
86484