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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43511684_43517901_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43511684 - 43517901
Intron Length:
6218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAAAGGG
5'SS Class:
major
3'SS Sequence:
GTGTCTCTGTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAA
U12 Branch Point Sequence:
GGGAAGTTAAAG
Flanking Amino Acid:
QRLEAERRARLQDEERRRQQ
Intron Amino Acid Position:
1556

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.45
1.1
54.1
43.5
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
66.7
0.38
1
66.3
40.7
Minor 5ss
28.7
-2.4
3.3
29.5
43.3
Minor BPS
39.8
-0.9
2.2
40.31
42.7

Associated Gene:

Gene:
AFDN
Ensembl Gene ID:
ENSAPLG00000002298
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002401
43509374 - 43595857
86484
ENSAPLT00000022178
43504174 - 43595836
91663
ENSAPLT00000017035
43504174 - 43595836
91663
ENSAPLT00000017034
43504174 - 43595836
91663