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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43522441_43523436_R

Intron Information:

Intron Rank:
24
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
43522441 - 43523436
Intron Length:
996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACAAA
5'SS Class:
strong_major
3'SS Sequence:
CGCCGTGGCTCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
TGTATATCAATT
Flanking Amino Acid:
LNQPSPMMQRGKPRPKSEGF
Intron Amino Acid Position:
1063

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
76.5
34.2
Major BPS
70.2
0.5
1
72.1
33
Major PPT
56.2
0.14
1
52.3
41.6
Minor 5ss
38
-1.3
3
48.1
47.6
Minor BPS
49.5
0.04
1.8
70.94
39.8

Associated Gene:

Gene:
AFDN
Ensembl Gene ID:
ENSAPLG00000002298
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017034
43504174 - 43595836
91663
ENSAPLT00000002401
43509374 - 43595857
86484
ENSAPLT00000022178
43504174 - 43595836
91663
ENSAPLT00000017037
43504174 - 43595836
91663
ENSAPLT00000017035
43504174 - 43595836
91663