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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43524148_43524309_R

Intron Information:

Intron Rank:
22
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
43524148 - 43524309
Intron Length:
162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTTAGTAAT
5'SS Class:
major
3'SS Sequence:
AATATATAATTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATATAA
U12 Branch Point Sequence:
CTTGCTTGAATA
Flanking Amino Acid:
SVVKGGAADVDGRLAAGDQL
Intron Amino Acid Position:
999

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
80.9
32.8
Major BPS
62.3
0.31
1
59.3
37.5
Major PPT
56
0.14
1.1
54.1
44.3
Minor 5ss
33.9
-1.8
2.6
41.2
39
Minor BPS
58.7
0.27
1.6
67.43
39.9

Associated Gene:

Gene:
AFDN
Ensembl Gene ID:
ENSAPLG00000002298
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002401
43509374 - 43595857
86484
ENSAPLT00000022178
43504174 - 43595836
91663
ENSAPLT00000017037
43504174 - 43595836
91663
ENSAPLT00000017035
43504174 - 43595836
91663
ENSAPLT00000017034
43504174 - 43595836
91663