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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43546547_43547967_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43546547 - 43547967
Intron Length:
1421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TTAACATTACTT
Flanking Amino Acid:
QEFLDPLCQRGFCRLIPHPR
Intron Amino Acid Position:
913

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1.2
81.4
33.4
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
87.4
0.84
0.6
85.2
22.3
Minor 5ss
38.3
-1.3
2.8
51.3
45.1
Minor BPS
53.3
0.18
1.9
74.97
41.6

Associated Gene:

Gene:
AFDN
Ensembl Gene ID:
ENSAPLG00000002298
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002401
43509374 - 43595857
86484
ENSAPLT00000022178
43504174 - 43595836
91663
ENSAPLT00000017037
43504174 - 43595836
91663
ENSAPLT00000017035
43504174 - 43595836
91663
ENSAPLT00000017034
43504174 - 43595836
91663