About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43554833_43557526_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43554833 - 43557526
Intron Length:
2694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGCTA
5'SS Class:
major
3'SS Sequence:
TCCTCCCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCTAC
U12 Branch Point Sequence:
CCCTCCCTACCC
Flanking Amino Acid:
VLAHLVQMAFKYLVHCLQSE
Intron Amino Acid Position:
678

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
72.4
38.8
Major BPS
48.5
-0
1.3
46.3
38.4
Major PPT
77.5
0.62
0.7
69.5
31.2
Minor 5ss
36
-1.6
3.5
47.7
42.3
Minor BPS
48.5
-0.1
2
58.49
46.6

Associated Gene:

Gene:
AFDN
Ensembl Gene ID:
ENSAPLG00000002298
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017035
43504174 - 43595836
91663
ENSAPLT00000017034
43504174 - 43595836
91663
ENSAPLT00000002401
43509374 - 43595857
86484
ENSAPLT00000022178
43504174 - 43595836
91663
ENSAPLT00000017037
43504174 - 43595836
91663