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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43557673_43558413_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43557673 - 43558413
Intron Length:
741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTACTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATTAT
U12 Branch Point Sequence:
TTTCTCTGTATT
Flanking Amino Acid:
VIQEVDQVDQKQKNIAGALA
Intron Amino Acid Position:
630

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
33.7
Major BPS
67
0.42
1.3
60.1
46.3
Major PPT
87
0.83
0.7
81
29.9
Minor 5ss
33.7
-1.9
3.3
48
47.7
Minor BPS
54.5
0.22
1.8
77.85
38.2

Associated Gene:

Gene:
AFDN
Ensembl Gene ID:
ENSAPLG00000002298
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017037
43504174 - 43595836
91663
ENSAPLT00000017035
43504174 - 43595836
91663
ENSAPLT00000002401
43509374 - 43595857
86484
ENSAPLT00000022178
43504174 - 43595836
91663