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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43562459_43563333_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43562459 - 43563333
Intron Length:
875

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
TCTTTCTTCATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTTCTTCATA
Flanking Amino Acid:
LPASIEFRESSEDAFLSAII
Intron Amino Acid Position:
554

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
72.6
33.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.6
0.76
0.7
79.9
25.6
Minor 5ss
32.5
-2
2.8
43.1
43.9
Minor BPS
64.5
0.45
1.7
74.1
38.6

Associated Gene:

Gene:
AFDN
Ensembl Gene ID:
ENSAPLG00000002298
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017037
43504174 - 43595836
91663
ENSAPLT00000017035
43504174 - 43595836
91663
ENSAPLT00000017034
43504174 - 43595836
91663
ENSAPLT00000002401
43509374 - 43595857
86484
ENSAPLT00000022178
43504174 - 43595836
91663