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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43572519_43575150_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
43572519 - 43575150
Intron Length:
2632

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AATACTTCAAAT
Flanking Amino Acid:
LMVKGPRHKTGAVQETTFDL
Intron Amino Acid Position:
471

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
76.7
33.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
91.4
0.93
0.6
85.5
29.2
Minor 5ss
30.1
-2.3
2.5
26.5
36
Minor BPS
53.6
0.19
1.7
70.47
39.7

Associated Gene:

Gene:
AFDN
Ensembl Gene ID:
ENSAPLG00000002298
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017034
43504174 - 43595836
91663
ENSAPLT00000002401
43509374 - 43595857
86484
ENSAPLT00000022178
43504174 - 43595836
91663
ENSAPLT00000017037
43504174 - 43595836
91663
ENSAPLT00000017035
43504174 - 43595836
91663