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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43576296_43582184_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43576296 - 43582184
Intron Length:
5889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTCTA
5'SS Class:
strong_major
3'SS Sequence:
ATTTGCTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TATTTGTTATTT
Flanking Amino Acid:
FAYYNYHAYEDGSDSRDKPK
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
78
38.6
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
80.7
0.69
0.9
73.5
36.5
Minor 5ss
43.3
-0.7
2.9
58.9
45.5
Minor BPS
51.5
0.13
2.2
76.26
41

Associated Gene:

Gene:
AFDN
Ensembl Gene ID:
ENSAPLG00000002298
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017035
43504174 - 43595836
91663