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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43589745_43590751_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43589745 - 43590751
Intron Length:
1007

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATAGA
5'SS Class:
major
3'SS Sequence:
TTTTGTTTCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TGTTTATTAAAT
Flanking Amino Acid:
FRSSDGRPDSGGTLRIYADS
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
71.5
40.2
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
75.8
0.58
1
75.1
38.8
Minor 5ss
33.4
-1.9
3
42.9
44
Minor BPS
65.7
0.57
1.7
83.28
36.9

Associated Gene:

Gene:
AFDN
Ensembl Gene ID:
ENSAPLG00000002298
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017037
43504174 - 43595836
91663
ENSAPLT00000017035
43504174 - 43595836
91663
ENSAPLT00000017034
43504174 - 43595836
91663
ENSAPLT00000002401
43509374 - 43595857
86484
ENSAPLT00000022178
43504174 - 43595836
91663