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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4359539_4359625_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4359539 - 4359625
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TACTCATGGATT
Flanking Amino Acid:
LRDIKIVKKLGGTIDDCELV
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
69.9
41.1
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
91.8
0.94
0.7
84.6
36
Minor 5ss
33.4
-1.9
2.9
35.8
40.7
Minor BPS
50.4
0.09
1.8
69.91
41

Associated Gene:

Gene:
CCT4
Ensembl Gene ID:
ENSAPLG00000003237
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003347
4356315 - 4362463
6149