About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4360361_4360656_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4360361 - 4360656
Intron Length:
296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTCAG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTGTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAA
U12 Branch Point Sequence:
CAAGCCTGGACT
Flanking Amino Acid:
NVLLIQKSILRDALSDLALH
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
70.6
41.3
Major BPS
75.5
0.63
1
66.3
40.4
Major PPT
81.7
0.71
0.8
80.2
31.9
Minor 5ss
39.7
-1.2
2.8
49
47.2
Minor BPS
52.3
0.15
1.7
65.5
44.8

Associated Gene:

Gene:
CCT4
Ensembl Gene ID:
ENSAPLG00000003237
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003347
4356315 - 4362463
6149