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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4360754_4361075_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4360754 - 4361075
Intron Length:
322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTGA
5'SS Class:
major
3'SS Sequence:
TGGTTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
GTATTCTTACTG
Flanking Amino Acid:
EREDIEFICKTIGTKPVAHI
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
69
38.3
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
80
0.67
1
76.9
42.1
Minor 5ss
35.4
-1.7
3.3
47.1
48.3
Minor BPS
56.8
0.08
1.7
60.31
41.9

Associated Gene:

Gene:
CCT4
Ensembl Gene ID:
ENSAPLG00000003237
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003347
4356315 - 4362463
6149