Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4361187_4361436_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4361187 - 4361436

Intron Length:

250

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGTGAG

5'SS Class:

strong_major

3'SS Sequence:

GTCTTTGTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

CTCTTTTTAATG

Flanking Amino Acid:

NLNGSGKLIKITGCTNPGKT

Intron Amino Acid Position:

376

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

68.4

38.7

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

82.6

0.73

0.9

80.2

37.3

Minor 5ss

25.2

-2.9

3.2

43.6

Minor BPS

64.1

0.31

1.4

61.64

41.7

Associated Gene:

Gene:

CCT4

Ensembl Gene ID:

ENSAPLG00000003237

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003347

4356315 - 4362463

6149