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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4361568_4361670_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4361568 - 4361670
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATATCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTGATTTTAATT
Flanking Amino Acid:
LCVIRCLVKKRALIAGGGAP
Intron Amino Acid Position:
419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.4
33
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
86.2
0.81
0.6
85
22.5
Minor 5ss
39.3
-1.2
3
52.1
44.5
Minor BPS
69.4
0.69
1.2
79.64
37.1

Associated Gene:

Gene:
CCT4
Ensembl Gene ID:
ENSAPLG00000003237
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003347
4356315 - 4362463
6149