Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_4366864_4369395_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4366864 - 4369395

Intron Length:

2532

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGACCACT

5'SS Class:

major

3'SS Sequence:

GTATTTCCCTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAATCAT

U12 Branch Point Sequence:

TAGACAATAATC

Flanking Amino Acid:

QSTQRRLQAIRNYEKQRMQE

Intron Amino Acid Position:

454

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.4

0.55

1.1

71.4

40.3

Major BPS

80.4

0.76

80.3

31.8

Major PPT

72.4

0.5

0.8

70.7

35.9

Minor 5ss

42.1

-0.9

2.9

58.6

45.7

Minor BPS

47.6

-0.2

1.9

58.9

39.6

Associated Gene:

Gene:

FAM161A

Ensembl Gene ID:

ENSAPLG00000003944

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041565

4364239 - 4369585

5347

ENSAPLT00000004034

4365200 - 4369522

4323

ENSAPLT00000046661

4364239 - 4371749

7511