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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43779129_43787110_R

Intron Information:

Intron Rank:
143899
Intron Class:
major
Intron Phase:
Intron Coordinates:
43779129 - 43787110
Intron Length:
7982

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
CTTTGTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
77.5
32.9
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
80.8
0.69
0.8
78.8
34.4
Minor 5ss
29.1
-2.4
2.8
34.7
41.7
Minor BPS
50.6
0.1
2.2
74.65
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024707
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040358
43778839 - 43787336
8498