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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43814336_43816920_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
43814336 - 43816920
Intron Length:
2585

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCCATCTCAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACATAAT
U12 Branch Point Sequence:
TTTTCTTCCATC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
87.3
29
Major BPS
66.4
0.41
1.1
66.3
36.5
Major PPT
66.4
0.37
1
66.6
33
Minor 5ss
36.7
-1.5
3
52.2
44.4
Minor BPS
56.6
0.19
1.9
74.09
37.4

Associated Gene:

Gene:
UNC93A
Ensembl Gene ID:
ENSAPLG00000002434
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002449
43813641 - 43834187
20547