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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43820270_43823245_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
43820270 - 43823245
Intron Length:
2976

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATAA
5'SS Class:
strong_major
3'SS Sequence:
CTTACTGAAATAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TCTTACTGAAAT
Flanking Amino Acid:
SLILSQASNKVEISEESLAC
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.3
28.1
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
59.2
0.21
1
55
39.2
Minor 5ss
36.6
-1.5
3.1
46.9
48.4
Minor BPS
60.6
0.41
1.8
79.58
41.7

Associated Gene:

Gene:
UNC93A
Ensembl Gene ID:
ENSAPLG00000002434
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002449
43813641 - 43834187
20547