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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43823372_43825932_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
43823372 - 43825932
Intron Length:
2561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATGAACT
Flanking Amino Acid:
LKYTLLGIYTASGVLAVLLI
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
100
1.24
0.5
100
0
Major PPT
92.4
0.95
0.7
88.3
28.9
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
74.9
0.86
1.7
94.74
31.5

Associated Gene:

Gene:
UNC93A
Ensembl Gene ID:
ENSAPLG00000002434
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002449
43813641 - 43834187
20547