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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43826151_43827279_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43826151 - 43827279
Intron Length:
1129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGGATG
5'SS Class:
major
3'SS Sequence:
TCTTCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTCAC
U12 Branch Point Sequence:
GTGTCACCACCA
Flanking Amino Acid:
QGFLAGDYTKTYVTCALGIH
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
0.9
71.2
40.2
Major BPS
57.2
0.18
1.4
63.1
44.5
Major PPT
89.3
0.88
0.6
84.5
23.3
Minor 5ss
36.5
-1.5
3.2
47.3
48.3
Minor BPS
40.7
-0.7
2.2
54.64
43.4

Associated Gene:

Gene:
UNC93A
Ensembl Gene ID:
ENSAPLG00000002434
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002449
43813641 - 43834187
20547