Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43895179_43895853_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

43895179 - 43895853

Intron Length:

675

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATC|GTAAGTACT

5'SS Class:

major

3'SS Sequence:

TCTTTTTTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTAAA

U12 Branch Point Sequence:

TGTGATTTAACT

Flanking Amino Acid:

MNITESSVTEYMY

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.4

0.55

1.3

77.1

37.8

Major BPS

81.6

0.78

0.8

24.9

Major PPT

1.01

0.5

90.9

21.2

Minor 5ss

39.9

-1.1

2.8

53.6

37.3

Minor BPS

66.3

0.59

1.6

81.57

39.9

Associated Gene:

Gene:

CCR6

Ensembl Gene ID:

ENSAPLG00000010486

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030163

43893785 - 43902647

8863

ENSAPLT00000010912

43893785 - 43902647

8863