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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_43922800_43923256_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
43922800 - 43923256
Intron Length:
457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGATTC
5'SS Class:
major
3'SS Sequence:
TTGATTTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTGATT
Flanking Amino Acid:
ETEDLNASDKLEDITQDHTI
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
71.4
33.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
80.5
0.69
0.9
73.6
41.7
Minor 5ss
51.2
0.04
2.7
68.1
36.9
Minor BPS
70.9
0.74
1.5
86.72
32.3

Associated Gene:

Gene:
FGFR1OP
Ensembl Gene ID:
ENSAPLG00000010607
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011048
43922419 - 43940822
18404